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👯Secondary Nutrients: Calcium, Magnesium & Sulphur

Complete guide to secondary macronutrients — Ca, Mg, S sources, forms, functions, deficiency diseases (Bitter Pit, Grass Tetany, Akiochi, Tea Yellows), and toxicity for competitive exams

Why Secondary Nutrients Matter: A Farmer’s Perspective

An apple grower in Himachal Pradesh finds dark, sunken spots on his fruit — Bitter Pit, caused by calcium deficiency. A dairy farmer in Haryana loses cattle to Grass Tetany because pasture grasses have too little magnesium. A mustard farmer in Rajasthan gets poor oil content because sulphur is deficient. These three secondary nutrients — Ca, Mg, and S — are called “secondary” not because they are less important biologically, but because they are needed in smaller quantities than N, P, and K.


Quick Comparison: Ca vs. Mg vs. S

PropertyCalcium (Ca)Magnesium (Mg)Sulphur (S)
Uptake formCa2+Mg2+SO42-
Average plant concentration0.5%0.2%0.1%
Plant concentration range0.2-1.0%0.1-0.6%0.1-0.4%
Mobility in plantImmobileMobileImmobile
Deficiency appears onYoung leaves/tipsOlder leavesYoung leaves
Main uptake mechanismMass flow (88%)Mass flow (73%)Mass flow (94%)
Key functionCell wall structureCentral atom of chlorophyllAmino acid synthesis
Famous deficiency diseaseBitter Pit (apple)Grass Tetany (cattle)Akiochi (rice) — toxicity

Calcium (Ca)

Sources of Soil Calcium

SourceDetails
Earth crust3.64% Ca
Primary mineralAnorthite (CaAl2Si2O3) — plagioclase feldspar
Arid/semi-arid mineralsCalcite (CaCO3), Dolomite (CaMg(CO3)2), Gypsum (CaSO4.2H2O)
Arid region soilsHigh Ca regardless of texture — low rainfall means little leaching
Humid region soilsEven soils from limestone become acidic due to Ca removal by leaching

Agricultural example: The black cotton soils of Maharashtra (formed from basalt) are naturally rich in Ca. But the red laterite soils of Kerala, under heavy monsoon rainfall, lose Ca through leaching and need regular liming.

Forms of Calcium in Soil

FormAvailability
Solution Ca2+Immediately plant-available
Exchangeable CaHeld on soil colloids; released into solution as needed
Mineral CaLocked in primary and secondary minerals; slowly released

These forms exist in dynamic equilibrium — when solution Ca is depleted by plant uptake or leaching, exchangeable Ca replenishes it.

Functions of Calcium

FunctionAgricultural Significance
Cell wall formation — calcium pectate in middle lamellaMiddle lamella acts as a biological gatekeeper; weak without Ca
Root development and cell division (meristematic activity) AFO 2017Critical in Telophase for cell plate formation
Chromosome stabilityConstituent of chromosome structure
Disease resistanceStabilises pectin, strengthens cell walls
Sugar translocationHelps transport sugars within plants
Enzyme activationActivates phosphatase and kinase
Fruit qualityIncreases stiffness and storage quality
Seed productionPresent in seeds as calcium phytate

TIP

Exam Tip: Ca is immobile in plant but mobile in soil. This contrast is frequently tested. Symptoms always appear on young leaves and growing tips.

Deficiency of Calcium

Soils seldom become Ca-deficient if pH is maintained near neutral. Deficiency is more common in acidic, highly leached soils and rapidly growing crops.

SymptomDetails
Young leaves — small, distorted, cup-shaped (hook-shaped), crinkled IBPS AFO 2018Resembles boron deficiency
Bud leaf — chlorotic white with green base, tip hooks downwardBecomes brittle
Corn — colorless tips covered with sticky gelatinous materialLeaves adhere to one another
Growing points die (terminal buds desiccate)Die-back in fruit trees
Bitter Pit in apple IBPS AFO 2016Dark brown sunken spots on fruit; corky areas in flesh
Blossom End Rot in tomatoDark, sunken, leathery patch at blossom end of fruit
Brassica — severe loss of colour in young leavesTerminal bud leaves hooked; old leaves collapse
Premature shedding of buds and blossomsReduced fruit quality; fruit rotting

Agricultural example: Blossom End Rot in tomato is often triggered by inconsistent watering rather than absolute Ca deficiency — uneven irrigation disrupts Ca transport to developing fruits. Regular, consistent watering is the best prevention.


Magnesium (Mg)

Sources of Soil Magnesium

TypeMinerals
Earth crust1.93% Mg
Primary mineralsBiotite, Dolomite, Hornblende, Olivine, Serpentine
Secondary mineralsChlorite, Illite, Montmorillonite
Arid regionsEpsomite (MgSO4.7H2O) accumulates

Forms of Magnesium in Soil

  • Occurs predominantly as exchangeable and solution Mg
  • Coarse-textured (sandy) soils have the greatest potential for Mg deficiency — lower CEC holds less Mg, prone to leaching
  • Competition between NH4+ and Mg2+ lowers Mg availability — heavy ammonium-based fertilisation suppresses Mg uptake

Functions of Magnesium

FunctionAgricultural Significance
Only mineral constituent of chlorophyll — located at its centre AFO 2017/18Without Mg, photosynthesis cannot occur
Chlorophyll accounts for 15-20% of total Mg in plantsRemaining 80-85% serves other functions
Structural component of ribosomesActivates polypeptide chain formation
Required for phosphorylation (ATP transfer)Essential for every energy-dependent process
RuBisCO activation — requires Mg2+ as cofactorThe most abundant enzyme on Earth
Promotes uptake and translocation of P and sugarsImproves phloem loading of sugars
Increases oil content of oilseed cropsImportant for mustard, soybean, groundnut
Regulates cellular pH, cation-anion balance, turgorMaintains cell homeostasis
Essential for protein synthesisAlong with N and S

TIP

Exam Tip: Mg is mobile in plant — deficiency appears on older leaves. Key phrase: “Mg = Middle of chlorophyll.”

Deficiency of Magnesium

SymptomDetails
Interveinal chlorosis — veins remain green, interveinal areas turn yellowHallmark symptom; striped/mottled pattern
Stiff, brittle, twisted leavesWrinkled and distorted; remain small
Cotton — lower leaves reddish-purple then necroticCalled “Redding of leaves
Brassica — chlorosis with interveinal mottling on older leavesCalled “Puckering”
Grass Tetany (Hypomagnesemia)Cattle on Mg-deficient forages; worsened by high NH4+ and K fertilisation
Sand Drown in TobaccoSevere interveinal chlorosis on sandy soils
Vine plants — stalk necrosis, stem die-backPremature leaf drop, fruit loss

Agricultural example: A dairy farmer in Punjab heavily fertilises his berseem (clover) pasture with ammonium sulphate and MOP. The high NH4+ and K suppress Mg uptake in the forage. His cattle develop Grass Tetany — muscle tremors and seizures. Solution: apply dolomite (supplies both Ca and Mg) and reduce K fertiliser.

Toxicity of Magnesium

  • Excess Mg absorption → browning of roots → growth ceases → death of roots and leaves
  • Counteracted by CO2 antagonistic action

Sulphur (S)

S vs. N Deficiency — A Common Exam Trap

TIP

Both S and N deficiency cause yellowing. The key difference:

  • N deficiency → older/lower leaves (N is mobile)
  • S deficiency → younger/upper leaves (S is immobile) This distinction is one of the most frequently tested questions.

Sources of Sulphur

SourceDetails
Atmosphere< 0.05 ppm as SO2
Earth crust0.06-0.10%
GypsumCaSO4.2H2O — most common S mineral and widely used fertiliser
EpsomiteMgSO4.7H2O
MirabiliteNa2SO4.10H2O
PyriteFeS2 — important in waterlogged soils

Forms of Sulphur in Soil

FormProportionDetails
Organic S90%Mineralization by microbes is the primary pathway to plant availability
Solution SO42-SmallImmediately available
Adsorbed SO42-SmallOn Fe/Al oxide surfaces; released as solution S is depleted
Insoluble SO42-VariableSlowly available
Reduced inorganic SVariableSulphides; found in waterlogged/anaerobic conditions

S Mineralization and Immobilization

Just like nitrogen, the C:S ratio of decomposing material determines which process dominates:

C:S RatioProcess
> 400:1Net Immobilization
< 200:1Net Mineralization
200-400Both processes

Factors Affecting S Oxidation and Mineralization

FactorOptimumDetails
Key organismThiobacillusChemolithotropic S-oxidising bacteria
Temperature25-40°CBell-shaped response curve
MoistureField capacityAerobic S-oxidising bacteria need O2
pH4.0 or lowerThiobacillus thrives in extremely acidic conditions
Plant presenceActiveRoot exudates stimulate microbial activity in rhizosphere

Functions of Sulphur

FunctionAgricultural Significance
Synthesis of S-containing amino acids — Cysteine, Cystine, MethionineWithout these, complete proteins cannot be formed
Activates proteolytic enzymes (e.g., papainase in papaya)Synthesis of papain
Constituent of vitamins — Thiamine, BiotinAnd coenzymes, glutathione, Acetyl CoA, ferredoxin
Role in chlorophyll synthesisStructural formation of chlorophyll
Pungency in onion, mustard, cabbage, cauliflower, garlicPolysulfides give characteristic smell/taste
Increases oil content — flax, soybean, groundnutCritical for oilseed economics
Disulfide linkages (-S-S-)Stabilise protein tertiary structure
Sulfhydryl (-SH) groupsIncrease cold resistance
Required for N fixation in legumesPart of nitrogenase enzyme system
Promotes root growth and seed formationOverall plant development

Agricultural example: In Rajasthan’s mustard belt, farmers who apply 20-40 kg S/ha (as gypsum) along with NPK see 15-20% higher oil content and significantly better seed yield compared to NPK alone.

Deficiency of Sulphur

S is immobile in plant — deficiency appears on young leaves.

SymptomDetails
Younger leaves — uniformly yellowish-greenStalks short and slender; growth retarded
Veins paler than interveinal areasUnlike N deficiency where entire leaf is uniformly yellow
No dead spots; plants do not lose lower leaves (unlike N)Leaves thick and firm
Poor seed set in rapeseedReduced oil and protein content
Tea YellowsYellowing and downward cupping in tea
Brassica — leaf cupping and curlingLamina restricted
Cabbage — reddening and purplingUpper and lower surfaces affected
Fruits — do not mature fullyRemain light green

Toxicity of Sulphur

ConditionDetails
Akiochi disease in riceH2S toxicity in waterlogged, high-OM soils with low Fe
MechanismUnder anaerobic conditions, SO42- reduced to toxic H2S by sulphur-reducing bacteria
SymptomsRoot blackening, growth depression (means “autumn decline” in Japanese)
RemedyAdding iron-containing materials (binds H2S as insoluble FeS)
Sulphide injuryNecrosis of leaves

Agricultural example: In the organic-rich paddy soils of coastal Odisha, Akiochi can be severe. Applying ferrous sulphate not only provides Fe but also binds toxic H2S, protecting rice roots.


Nutrient Uptake Mechanisms

NutrientRoot InterceptionMass FlowDiffusion
Ca12%88%0%
Mg27%73%0%
S4%94%2%

Summary Table: Secondary Nutrients at a Glance

TopicCalciumMagnesiumSulphur
Uptake formCa2+Mg2+SO42-
Avg. plant conc.0.5%0.2%0.1%
Mobility in plantImmobileMobileImmobile
Deficiency onYoung leaves/tipsOlder leavesYoung leaves
Key functionCell wall (Ca pectate)Central atom of chlorophyllAmino acids (Cys, Met)
Key deficiency diseaseBitter Pit (apple), Blossom End Rot (tomato)Grass Tetany, Sand Drown (tobacco), Puckering (brassica)Tea Yellows
Key toxicity issueRoot browningAkiochi in rice (H2S)
C:S immobilization> 400:1
C:S mineralization< 200:1
Primary mineralAnorthite, CalciteBiotite, DolomiteGypsum, Pyrite

TIP

Mnemonics for secondary nutrients:

  • Ca = “Cell walls, Apple Bitter Pit, Can’t move in plant (immobile)”
  • Mg = “Middle of chlorophyll, Moves in plant (mobile), Mg-deficient cattle get Grass Tetany”
  • S = “Smells in onion/mustard, Stays put in plant (immobile), Sulphur amino acids (Cys, Cystine, Met)“

References
- Tisdale, S.L., Nelson, W.L., Beaton, J.D., Havlin, J.L. 1997. Soil Fertility and Fertilizers. 5th ed. Prentice Hall of India, New Delhi.
- Singh, S.S. 1995. Soil Fertility and Nutrient Management. Kalyani Publishers, Ludhiana.
- Maliwal, G.L. and Somani, L.L. 2011. Soil Technology. Agrotech.
- IARI Toppers Soil Science Part-9 (6th Edition 2025).

Summary Cheat Sheet

Concept / TopicKey Details
Ca uptake form & conc.Ca²⁺; avg. 0.5% dry weight
Ca mobilityImmobile in plant → deficiency on young leaves/tips
Ca main functionCell wall formation — calcium pectate in middle lamella
Ca role in cell divisionCritical in Telophase for cell plate formation
Bitter PitCa deficiency in apple — dark brown sunken spots on fruit
Blossom End RotCa deficiency in tomato — dark leathery patch at blossom end
Ca uptake mechanismMass flow (88%), root interception (12%)
Ca primary mineralAnorthite (plagioclase feldspar); also calcite, dolomite, gypsum
Mg uptake form & conc.Mg²⁺; avg. 0.2% dry weight
Mg mobilityMobile in plant → deficiency on older leaves
Mg main functionCentral atom of chlorophyll; chlorophyll has 15–20% of total plant Mg
Mg other functionsRuBisCO activation; phosphorylation (ATP); increases oil content
Interveinal chlorosisHallmark Mg deficiency — veins green, interveinal areas yellow
Grass TetanyCattle on Mg-deficient forages; worsened by high K and NH₄⁺
Sand DrownSevere Mg deficiency in tobacco on sandy soils
PuckeringMg deficiency in brassica
Mg toxicityBrowning of roots → growth ceases → death
S uptake form & conc.SO₄²⁻; avg. 0.1% dry weight
S mobilityImmobile in plant → deficiency on young leaves
S vs N deficiencyBoth yellow; N on older leaves (mobile), S on younger leaves (immobile)
S main functionSynthesis of cysteine, cystine, methionine (S-amino acids)
S and pungencyPolysulfides give smell/taste to onion, mustard, garlic, cabbage
S and oil contentIncreases oil in flax, soybean, groundnut
S vitaminsConstituent of thiamine and biotin
Tea YellowsS deficiency in tea — yellowing + downward cupping
Akiochi diseaseH₂S toxicity in waterlogged rice; remedy: add iron materials
Organic S in soil90% of soil S is organic; mineralised by microbes
S mineralization C:S ratio<200:1 = net mineralization; >400:1 = net immobilization
ThiobacillusKey S-oxidising bacterium; thrives at pH ≤ 4.0
S and N fixationS is part of nitrogenase enzyme system
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